Mastering In-Database Feature Engineering with Ibis: A Practical Guide to Portable Pipelines

8 min read
Editorially Reviewed
by Dr. William BobosLast reviewed: Jan 9, 2026
Mastering In-Database Feature Engineering with Ibis: A Practical Guide to Portable Pipelines

Is your data trapped in silos, slowing down your feature engineering?

Introduction: The Power of In-Database Feature Engineering

In-database feature engineering moves the transformation process inside your database. Instead of extracting data and manipulating it externally, you leverage the database's processing power directly. This approach unlocks several key advantages.

Benefits of Portable Data Pipelines

  • Portability: Build once, run anywhere. Using tools like the Ibis framework ensures your pipelines are not tied to a specific system. Ibis is a Python framework that enables lazy manipulation of data, and provides a layer of abstraction over SQL.
  • Efficiency: Reduce data movement. This means faster processing, lower latency, and streamlined data workflows.
  • Scalability: Databases are built to handle large datasets. This makes in-database feature engineering ideal for scaling your portable data pipelines.
> Ibis uses lazy evaluation, meaning transformations aren't executed until you explicitly request the results.

Ibis and DuckDB: A Powerful Combination

The Ibis framework, coupled with an execution engine like DuckDB, provides a robust solution. DuckDB is an in-process SQL OLAP database management system, great for analytical tasks. Ibis allows you to write Python code that compiles into SQL queries executed directly within DuckDB, or other supported backends.

Harnessing the power of data directly within your database is no longer a futuristic fantasy, but an attainable reality.

Understanding Ibis: Lazy APIs for Data Transformation

Ibis is a Python data framework that brings data transformation capabilities directly to your data warehouse. It provides a high-level, unified Ibis API to interact with various data sources. Ibis allows you to define data manipulation pipelines without immediately executing them.

Lazy Evaluation in Action

Ibis utilizes Ibis lazy evaluation, meaning transformations are not performed until explicitly requested. This approach offers several advantages:

  • Optimized Execution: Ibis can optimize the entire pipeline before execution.
  • Resource Efficiency: Only necessary data is processed and retrieved.
  • > This is akin to sketching a blueprint before constructing a building, ensuring a more efficient and optimized outcome.

Code Example: Filtering and Aggregating Data

python
import ibis

Connect to a sample SQLite database

con = ibis.sqlite.connect('path/to/your/database.db') table = con.table('your_table')

Define the Ibis expression

filtered = table[table.column_name > 10] aggregated = filtered.group_by('category').aggregate(average_value=filtered.value.mean())

Execute the expression

result = aggregated.execute()

This example shows how to filter and aggregate data using Ibis API without eagerly loading data into memory.

Conclusion

Ibis lazy evaluation empowers you to construct complex data transformation pipelines with optimized performance and resource utilization. The unified API allows for seamless portability across different data sources. Explore our Software Developer Tools to further enhance your data engineering capabilities.

Is setting up In-Database Feature Engineering with Ibis proving difficult? Let's simplify integrating Ibis and DuckDB, creating a seamless environment.

Installing Ibis and DuckDB

First, let's tackle the installation. You'll need to install Ibis and install DuckDB. Use pip:
bash
pip install ibis-framework duckdb
This command fetches both packages. Ibis will handle data operations. DuckDB acts as our efficient in-memory database.

Connecting Ibis to DuckDB

Now, let's connect Ibis to DuckDB. Here’s how to configure Ibis DuckDB integration using Python.

python
import ibis
con = ibis.duckdb.connect()

This establishes a connection. You're ready to query DuckDB through Ibis.

Creating and Loading Data

To load data, first create a table. We'll then populate it.

python
con.execute("CREATE TABLE my_data (id INTEGER, value DOUBLE)")
con.execute("INSERT INTO my_data VALUES (1, 3.14), (2, 6.28)")

Alternatively, load data from a Pandas DataFrame:

python
import pandas as pd
data = pd.DataFrame({'id': [3, 4], 'value': [9.42, 12.56]})
con.create_table('my_data_from_pandas', data, table_exists=True)
Now, my_data and my_data_from_pandas tables are available.

Troubleshooting

Facing Python environment setup issues?
  • Ensure your pip is up-to-date: pip install --upgrade pip
  • Double-check your DuckDB version. Incompatibilities can arise.
> Ibis provides an exceptional tool for data transformation.
  • Consider using virtual environments to isolate dependencies.
With these steps, you'll have a functional Ibis and DuckDB environment. Now you can explore its capabilities. Why not explore our Data Analytics AI Tools?

Building Feature Engineering Pipelines with Ibis and DuckDB

Want to turn raw data into rocket fuel for your AI models? A solid feature engineering pipeline is key.

Ibis: Your Portable Pipeline Builder

Ibis is a Python library. Ibis allows you to define data transformations in a backend-agnostic way. Think of it as a universal translator for data wrangling.

Crafting Features with Ibis

Ibis makes it easy to create a data pipeline with common feature engineering operations:
  • Aggregations: Summarize data. Calculate sums, averages, or counts.
  • Window Functions: Compute metrics over a sliding window of data. This enables calculating moving averages.
  • String Manipulations: Extract or modify textual information.
> For example, you can engineer a "days since last purchase" feature with window functions.

Ibis and DuckDB: A Powerful Duo

Ibis shines when paired with DuckDB. DuckDB provides a fast, in-process analytical database:
  • DuckDB feature engineering becomes incredibly efficient.
  • Portability: Ibis lets you swap out DuckDB later without rewriting your entire pipeline.

Chaining Operations for Data Pipelines

Ibis uses a chainable API to build feature engineering pipelines. You can define transformations sequentially:

python

Example Ibis pipeline (conceptual)

data.groupby('user_id').aggregate( latest_purchase = data.time.max() )

This creates a new table with the latest purchase time for each user. Therefore, Ibis empowers you to master in-database Ibis feature engineering.

Why settle for static data warehouses when you can engineer features on the fly?

Mastering Ibis Performance

Optimizing Ibis performance optimization requires a strategic approach. Efficient pipeline execution is key. Consider these strategies:

  • Lazy evaluation: Ibis leverages this to defer execution. Only compute when necessary.
  • Query optimization: Ibis automatically optimizes queries for speed.
  • Data locality: Keep data close to the compute engine.

Execution Strategies

Ibis pipelines don't execute immediately. This delayed execution enables powerful optimizations. Try to push down operations to the underlying database whenever possible.

For example, filtering early can significantly reduce the amount of data processed later.

Data Materialization

Deciding when to materialize intermediate results is crucial. Data materialization involves computing and storing results. It can help avoid recomputation. However, it uses more memory. Consider materializing:

  • Expensive computations
  • Frequently reused intermediate results

Unleashing DuckDB Performance

DuckDB performance can be significantly enhanced using its built-in features. Using appropriate data types will help. Also use indexes. These speed up query execution. DuckDB's columnar storage also helps.

Debugging and Profiling

Debugging Ibis pipelines requires understanding execution. Use ibis.show_graph() to visualize the pipeline. Profile queries to identify bottlenecks. This is very important for query optimization.

With the right strategies, your Ibis pipelines will run smoothly. Explore our Data Analytics tools to learn more.

Portability and Deployment: Sharing Your Ibis Pipelines

Is your amazing Ibis pipeline stuck on your local machine? Let's liberate your feature engineering creations and make them accessible everywhere!

Making Your Pipelines Portable

Ibis excels at Ibis portability, but requires some finesse for seamless data pipeline deployment. Here are key considerations:

  • Abstract Connection Details: Avoid hardcoding database credentials. Leverage environment variables or configuration files. This enables easy swapping between development, testing, and production environments.
  • Dependency Management: Use pip freeze > requirements.txt to capture all Python package dependencies. Share this file with your pipeline for effortless replication of the environment.
  • Relative Paths: Prefer relative paths for data files. This allows the pipeline to function correctly regardless of the deployment location.

Serializing and Deserializing Ibis Expressions

Ibis expressions can be serialized for storage or transmission. Here’s how:

  • Serialization: Use ibis.to_expr() and pickle.dumps() to convert your pipeline into a byte stream.
  • Deserialization: Reverse the process with pickle.loads() and ibis.read_parquet() to reconstruct your pipeline.
> This process ensures that your pipeline serialization captures not only the transformations but also the data schema.

Integrating Into Data Workflows and Applications

Integrating Into Data Workflows and Applications - in-database feature engineering

Integrating Ibis into larger workflows is where the magic happens. Consider these strategies for data workflow integration:

  • Orchestration Tools: Use tools like Airflow or Prefect to schedule and manage your Ibis pipelines.
  • API Endpoints: Expose your Ibis pipeline as an API using Flask or FastAPI, allowing other applications to consume the processed data.
  • Version Control: Store your Ibis code in Git and use branching strategies to manage changes. Tools like GitHub Copilot can be valuable here.
  • Collaboration: Encourage code reviews and shared ownership to enhance maintainability.
By following these guidelines, you can achieve true Ibis portability and seamlessly integrate your data pipelines into any environment. Explore our Software Developer Tools to discover solutions that can assist you in the deployment of your Ibis pipelines.

Is your team struggling with complex feature engineering tasks? Embrace the future with advanced techniques in Ibis and in-database processing.

Advanced Ibis Features: Unleashing the Power Within

Ibis isn't just about basic data manipulation. It offers advanced features to elevate your feature engineering.

  • Custom UDFs (User Defined Functions): Ibis lets you define your own functions. You can tailor these functions to your specific needs. These Ibis UDFs can execute directly within your database. This minimizes data movement and maximizes performance.
  • Extensions: Extend Ibis capabilities further. Create specialized operations optimized for your environment.
  • Open Source Synergies: Tap into a wealth of community-driven projects. Libraries like scikit-learn and XGBoost integrate naturally with in-database workflows. Explore Software Developer Tools for similar options.
>In-database processing reduces the overhead of moving data between systems. You keep your data secure and insights arrive faster!

The Future is In-Database: Machine Learning and Beyond

The Future is In-Database: Machine Learning and Beyond - in-database feature engineering

What’s next for in-database machine learning? Expect tighter integrations with ML frameworks. Think real-time predictions without data extraction.

  • Seamless ML Integration: Train models directly within the database. Deploy them without exporting data. This streamlines your ML pipelines.
  • Data Science Trends: This aligns with the growing trend of pushing computation to the data. It enables Ai-powered data analysis directly at the source.
  • Real-Time Insights: Imagine real-time model scoring on streaming data. Make instantaneous, data-driven decisions.
The future of feature engineering lies in harnessing the power of your database. By adopting tools like Ibis, data scientists can unlock unprecedented efficiency. They can also discover novel insights, and deploy AI models faster. Explore our Learn section for more resources.


Keywords

in-database feature engineering, Ibis framework, DuckDB, portable data pipelines, lazy evaluation, Ibis API, Python data framework, data transformation, feature engineering pipeline, data pipeline, data aggregation, Ibis performance optimization, data workflow integration, Ibis UDFs, in-database machine learning

Hashtags

#FeatureEngineering #DataPipelines #IbisFramework #DuckDB #DataScience

Related Topics

#FeatureEngineering
#DataPipelines
#IbisFramework
#DuckDB
#DataScience
#AI
#Technology
#MachineLearning
#ML
in-database feature engineering
Ibis framework
DuckDB
portable data pipelines
lazy evaluation
Ibis API
Python data framework
data transformation

About the Author

Dr. William Bobos avatar

Written by

Dr. William Bobos

Dr. William Bobos (known as 'Dr. Bob') is a long-time AI expert focused on practical evaluations of AI tools and frameworks. He frequently tests new releases, reads academic papers, and tracks industry news to translate breakthroughs into real-world use. At Best AI Tools, he curates clear, actionable insights for builders, researchers, and decision-makers.

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